Commit de307152 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: we would like to analyze these VDDJ sequences in TRA+D and TRD+

parent e365691f
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# VDDJ non detecte
# /9 TRDD3 1/ -> 13-9-1 = 3nt, too short
>TRDV2 7/2/4 TRDD2 0/0/9 TRDD3 1/1/31 TRAJ29 [TRD] TODO
AcgagaaaaggacatctatgGCCCTGGTTTCAAagacAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTTAAGATACTTGCACCATCAGAGAGAGATGAAGGGTCTTACTACTGTGCCTGGGCCTACTACCaaagggcacaagactttctgtgattgcaagtaagtgtttctagccatccttgattttgatcagcaatggcttcttcccttgaattatttttcagtgtacctagaatgccttttgcccccaagaaaggtttggaaggagctgggtcattagcattgcgcaggaaattacaggttattctgttataattcgaagccactggacagtcatgatgcacacagatctggcctgcattgcacctggctagtgctcagtgtgtagctatctgagctctgatgtaagt
# /3 TRDD2 3/ -> 9-3-3 = 3nt, too short
>TRDV2 3/0/3 TRDD2 3/2/0 TRDD3 1/2/3 TRAJ29 [TRD] TODO
TGGTTTNAAgacaaTTTCcaAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTtaAgATACTTGCaCCATCAgAgAGAGATgAaGGGTCTtACtaCTGTGCCTGTGACtCCCCACtGGGGGATACCTATTCAGGAAACACACCTcTTGTcTTTGGAAaGGGCACAAgAcTTTCTGTGATTGCAAGTAAgTGTTTCTAgCcaTCCTTGATTTTGATcagCAatGGCTTCTTCCCTTGAATTATTTTTCaGTGTACCTAgaATGCtTTTgCCA
>TRDV1 0/18/2 TRDD2 0/5/0 TRDD3 4/7/11 TRAJ29 [TRD] TODO
>TRDV1 0/18/2 TRDD2 0/5/0 TRDD3 4/7/11 TRAJ29 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTAGtGCGGAGGGGCGGAACTTTCCTACGTTTTACTGGGGGAACCCAgCaacacacctcttgtctttggaaagggcacaagactttctgtgattgcaagtaagtgtttctagccatccttgattttgatcagcaatggcttcttcccttgaattatttttcagtgtacctagaatgccttttgcccccaagaaaggtttggaaggagctgggtcattagcattgcgcaggaaattacaggttattctgttataattcgaagccactggacagtcatgatgcacacagatctggcctgcattgcacctggctagtgctcagtgtgtagctatctgagctctgatgtaagt
>TRAV29/DV5*01 3/8/3 TRDD2 1/0/3 TRDD3 0/0/2 TRDJ1 [TRD+] TODO
>TRAV29/DV5*01 3/8/3 TRDD2 1/0/3 TRDD3 0/0/2 TRDJ1 [TRD+]
cattAggtAAAAATGaagatGGAAGATTCACTGTCTTCTTAAACAAAAGTGCCAAGCACCtctcTctGCACATTGTGCCCTCCCAGCCTGGAGACTCTGCAGTGTACTTCTGTGCAGCAACACCGAGATCCTAGGGGGATACgACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGgAACa
\ No newline at end of file
......@@ -11,34 +11,41 @@ AgcgggtggtgatggcaaagtgccaaggaaagggaaaaaggaagaagagggtttttatactgatgtgtttCattgtgCCT
GAAtcGAtAttGCAAAGAACCtGGCtGtACttAAGatACttGCACCAtCAGaGaGaGAtGAAGgGtCttACtACtGtGCCtGtGACACCCCCCtGTACtGGGGGAtACGCACAGtGCtACAAAACCtACAGAGACCtGTACAAAAACtGCAGGGGCAAAAGtGCCATttCCCtGGGAtAtCCtCACCCtGGGTCCCAA
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# VDDJ non detecte
# VDDJ
>TRDV1 2/7/2 TRDD2 0/3/0 TRDD3 3/6/0 TRDJ1 [TRD+] TODO
>TRDV1 2/7/2 TRDD2 0/3/0 TRDD3 3/6/0 TRDJ1 [TRD+]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAATCTCGATTTCCTACCGTACTGGGGGATCTCGGGACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
>TRDV1 2/0/0 TRDD2 0/1/2 TRDD3 0/11/4 TRDJ1 [TRD] TODO
>TRDV1 2/0/0 TRDD2 0/1/2 TRDD3 0/11/4 TRDJ1 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACCTTCCTACGTGGGGGATACGAGGGTtgGGATCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
# /0 TRDD1 4/ -> 8-0-4 = 4nt, very short
>TRDV1 1/0/0 TRDD1 4/5/2 TRDD3 1/5/0 TRDJ1 [TRD] TODO
nnnCAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACGAAAAGGAATGGGGGATACTTCCTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACnn
>TRDV1 0/0/1 TRDD1 3/9/2 TRDD3 1/6/10 TRDJ1 [TRD] TODO
>TRDV1 0/0/1 TRDD1 3/9/2 TRDD3 1/6/10 TRDJ1 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTAAATTTCGTGATTTGGGGGATACCTTGGGACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
# /0 TRDD1 4/ -> 8-0-4 = 4nt, very short
>TRDV1 10/8/1 TRDD1 3/3/2 TRDD2 1/21/27 TRDJ1 [TRD] TODO
nnCAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCCTCCCGCAAAATTCATTCCTACTGCCGGGATGCACTTTTCCTTGAACCCGTGTGACTGTGGAACANNNNNN
>TRDV1 4/4/0 TRDD2 2/0/1 TRDD3 1/5/0 TRDJ1 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGCaCCCCTTCCTCTGGGGGATACAGGGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
>TRDV1 2/4/4 TRDD2 0/5/0 TRDD3 5/9/0 TRDJ1 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAAATGGCCTACAGGAACTGGGGGTCCCTTTGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
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# VDDDJ
>TRDV1 0/1/1 TRDD1 2/0/0 TRDD2 5/15/2 TRDD3 6/0/4 TRDJ1 [TRD] TODO
ACAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTTAAATACCTTAGGGATGGTCGAGGATGGGGCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
>TRDV1 4/4/0 TRDD2 2/0/1 TRDD3 1/5/0 TRDJ1 [TRD] TODO
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGCaCCCCTTCCTCTGGGGGATACAGGGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
>TRDV1 1/0/2 TRDD1 3/8/1 TRDD2 3/12/0 TRDD3 2/0/9 TRDJ1 [TRD] TODO
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACAATCACCTCTTCTTCCCCACGAAAACATACTGGGGGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
>TRDV1 2/4/4 TRDD2 0/5/0 TRDD3 5/9/0 TRDJ1 [TRD] TODO
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAAATGGCCTACAGGAACTGGGGGTCCCTTTGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
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# double DD non detecte
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