Commit dde78d99 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

tests: test generic .vdj.fa headers

parent 00971938
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -c segment -3 -g $VIDJIL_DIR/germline -i ../should-vdj-tests/Demo-X5.should-vdj.fa
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -c segment -3 -E 1.0 -g $VIDJIL_DIR/germline -i ../should-vdj-tests/Demo-X5.should-vdj.fa
$ Detects a CDR3 on regular V(D)J recombinations
1: IGH SEG.* [{].*[}]
......@@ -16,3 +16,19 @@ $ Do not detect a CDR3 on irregular/incomplete recombinations
0: TRA[+]D SEG.* [{].*[}]
0: TRB[+] SEG.* [{].*[}]
0: TRD[+] SEG.* [{].*[}]
$ Compute the correct .vdj.fa headers, regular V(D*)J recombinations (as well as on TRA+D)
5: [+] VJ
f2: [+] VDJ
f1: [+] VDDJ
$ Compute the correct .vdj.fa headers, other irregular/incomplete recombinations
1: [+] DJ .* IGH[+]
1: [+] DJ .* TRB[+]
1: [+] VD .* TRD[+]
1: [+] DD .* TRD[+]
1: [+] V3 .* IGK[+]
1: [+] r3 .* IGK[+]
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