tests: test generic .vdj.fa headers

algo/tests/should-get-tests/cdr3.should-get → algo/tests/should-get-tests/cdr3-vdj-fa.should-get

-!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -c segment -3 -g $VIDJIL_DIR/germline -i ../should-vdj-tests/Demo-X5.should-vdj.fa
+!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -c segment -3 -E 1.0 -g $VIDJIL_DIR/germline -i ../should-vdj-tests/Demo-X5.should-vdj.fa
 
 $ Detects a CDR3 on regular V(D)J recombinations
 1: IGH SEG.* [{].*[}]
@@ -16,3 +16,19 @@ $ Do not detect a CDR3 on irregular/incomplete recombinations
 0: TRA[+]D SEG.* [{].*[}]
 0: TRB[+] SEG.* [{].*[}]
 0: TRD[+] SEG.* [{].*[}]
+
+
+$ Compute the correct .vdj.fa headers, regular V(D*)J recombinations (as well as on TRA+D)
+5: [+] VJ
+f2: [+] VDJ
+f1: [+] VDDJ
+
+$ Compute the correct .vdj.fa headers, other irregular/incomplete recombinations
+1: [+] DJ .* IGH[+]
+1: [+] DJ .* TRB[+]
+
+1: [+] VD .* TRD[+]
+1: [+] DD .* TRD[+]
+
+1: [+] V3 .* IGK[+]
+1: [+] r3 .* IGK[+]