Mise à jour terminée. Pour connaître les apports de la version 13.8.4 par rapport à notre ancienne version vous pouvez lire les "Release Notes" suivantes :
https://about.gitlab.com/releases/2021/02/11/security-release-gitlab-13-8-4-released/
https://about.gitlab.com/releases/2021/02/05/gitlab-13-8-3-released/

Commit dd1e17ed authored by Mathieu Giraud's avatar Mathieu Giraud

tests: the .vidjil file should contain the sequence on the good strand

parent 0eccf628
!LAUNCH: $LAUNCHER ../../vidjil -z 1 -k 9 -G ../../germline/IGH -% 0.001 -r 2 -x 1000 -y 1 -c clones ../../data/Stanford_S22.fasta | sed 's/--IGH--.*VDJ\\(.*\\).$/\\1/' | sed 's/IGH SEG_./IGH SEG_X/' > vidjil_s22.log && $LAUNCHER ../../vidjil -z 1 -k 9 -G ../../germline/IGH -% 0.001 -r 2 -x 1000 -y 1 -c clones ../../data/Stanford_S22.rc.fasta | sed 's/--IGH--.*VDJ\\(.*\\).$/\\1/' | sed 's/IGH SEG_./IGH SEG_X/' > vidjil_s22_rc.log && diff vidjil_s22.log vidjil_s22_rc.log
!LAUNCH: $LAUNCHER ../../vidjil -z 1 -k 9 -G ../../germline/IGH -% 0.001 -r 2 -x 1000 -y 1 -c clones ../../data/Stanford_S22.fasta | sed 's/--IGH--.*VDJ\\(.*\\).$/\\1/' | sed 's/IGH SEG_./IGH SEG_X/' > vidjil_s22.log && $LAUNCHER ../../vidjil -z 1 -k 9 -G ../../germline/IGH -% 0.001 -r 2 -x 1000 -y 1 -c clones ../../data/Stanford_S22.rc.fasta | sed 's/--IGH--.*VDJ\\(.*\\).$/\\1/' | sed 's/IGH SEG_./IGH SEG_X/' > vidjil_s22_rc.log && diff out/Stanford_S22{,.rc}.vidjil | grep GGG && diff vidjil_s22.log vidjil_s22_rc.log
!EXIT_CODE: 1
$ Same number segmented
......@@ -16,4 +16,5 @@ $ Keep the same number of windows
$ Same segmentation for the main clone
0:clone.001.*IGH SEG_
$ No sequence difference in the .vidjil
0:"sequence"
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