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Commit dd0ff4a6 authored by Mathieu Giraud's avatar Mathieu Giraud
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tests: gzip.should, remove VIDJIL_DEFAULT_OPTIONS, split and clean 

Closes #3762.
parent 00c9f9d3
Pipeline #74901 passed with stages
in 123 minutes and 36 seconds
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algo/tests/should-get-tests/gzip.should
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!NO_LAUNCHER:
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/clones_simul.fa > out-fa ; $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -b clones_simul $VIDJIL_DATA/clones_simul.fa.gz > out-fa-gz ; diff -s -I '\#' -I 'index' -I 'Command line' out-fa out-fa-gz ; echo 'Diff: '$?; wc -l out-fa-gz
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/clones_simul.fa > out-fa
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -b clones_simul $VIDJIL_DATA/clones_simul.fa.gz > out-fa-gz
!NO_EXTRA:
diff -s -I '\#' -I 'index' -I 'Command line' out-fa out-fa-gz ; echo 'Diff: '$?; wc -l out-fa-gz
$ Identical output
1:Diff: 0
......
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