core/segment.cpp: '-u' also displays segmentation score

daa4c4ae · Mathieu Giraud · 300e75f6 · daa4c4ae
Commit daa4c4ae authored Feb 03, 2015 by Mathieu Giraud
Hide whitespace changes
Inline Side-by-side

Showing with 6 additions and 0 deletions

algo/core/segment.cpp algo/core/segment.cpp +6 -0

No files found.
--- a/algo/core/segment.cpp
+++ b/algo/core/segment.cpp
@@ -263,6 +263,12 @@ KmerMultiSegmenter::KmerMultiSegmenter(Sequence seq, MultiGermline *multigermlin
          *out_unsegmented << "#"
                           << left << setw(4) << kseg.segmented_germline->code << " "
                           << left << setw(20) << segmented_mesg[kseg.getSegmentationStatus()] << " ";
+
+          if (kseg.isSegmented())
+            *out_unsegmented << right << setw(3) << kseg.score << " ";
+          else
+            *out_unsegmented << "    " ;
+          
          if (kseg.getSegmentationStatus() != UNSEG_TOO_SHORT) 
            *out_unsegmented << kseg.getKmerAffectAnalyser()->toString();