Mise à jour terminée. Pour connaître les apports de la version 13.8.4 par rapport à notre ancienne version vous pouvez lire les "Release Notes" suivantes :
https://about.gitlab.com/releases/2021/02/11/security-release-gitlab-13-8-4-released/
https://about.gitlab.com/releases/2021/02/05/gitlab-13-8-3-released/

Commit d942d835 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil.cpp, core/segment.h: default e-value threshold to 1.0

The e-value threshold just works. It is thus enabled by default in the next release.
parent 95b26ea0
......@@ -30,7 +30,7 @@
#define NO_LIMIT_VALUE -1
#define THRESHOLD_NB_EXPECTED NO_LIMIT_VALUE /* Threshold of the accepted expected value for number of found k-mers */
#define THRESHOLD_NB_EXPECTED 1.0 /* Threshold of the accepted expected value for number of found k-mers */
......
......@@ -180,7 +180,7 @@ void usage(char *progname, bool advanced)
<< " -m <int> minimal admissible delta between last V and first J k-mer (default: " << DEFAULT_DELTA_MIN << ") (default with -D: " << DEFAULT_DELTA_MIN_D << ")" << endl
<< " -M <int> maximal admissible delta between last V and first J k-mer (default: " << DEFAULT_DELTA_MAX << ") (default with -D: " << DEFAULT_DELTA_MAX_D << ")" << endl
<< " -w <int> w-mer size used for the length of the extracted window (default: " << DEFAULT_W << ") (default with -D: " << DEFAULT_W_D << ")" << endl
<< " -e <float> maximal e-value for determining if a segmentation can be trusted (default: '" << NO_LIMIT << "': no limit)" << endl
<< " -e <float> maximal e-value for determining if a segmentation can be trusted (default: " << THRESHOLD_NB_EXPECTED << ")" << endl
<< endl
<< "Window annotations" << endl
......
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