Commit d85c47b2 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil.cpp: with -G, do not load ...D germline if there was no -d option

parent 321208f1
......@@ -514,6 +514,9 @@ int main (int argc, char **argv)
size_t min_cover_representative = (size_t) (MIN_COVER_REPRESENTATIVE_RATIO_MIN_READS_CLONE * min_reads_clone) ;
if (!segment_D) // TODO: add other constructor to Fasta, and do not load rep_D in this case
f_rep_D = "";
// Default seeds
#ifndef NO_SPACED_SEEDS
......@@ -778,9 +781,7 @@ int main (int argc, char **argv)
//////////////////////////////////
//$$ Read sequence files
if (!segment_D) // TODO: add other constructor to Fasta, and do not load rep_D in this case
f_rep_D = "";
OnlineFasta *reads;
......
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