Commit d83354ca authored by Thonier Florian's avatar Thonier Florian
Browse files

tools/tests; update some tmp files in should-get tests

Link to #3944
parent 928d844f
Pipeline #90714 failed with stage
in 7 seconds
...@@ -25,5 +25,5 @@ $ should have two time 'distributions' (console log + into vidjil file) ...@@ -25,5 +25,5 @@ $ should have two time 'distributions' (console log + into vidjil file)
2:distributions 2:distributions
$ Axis title should be present 122 times (2*30+1/file) $ Axis title should be present 122 times (2*60+1/file)
122:lenCDR3 122:lenCDR3
\ No newline at end of file
...@@ -10,7 +10,7 @@ $ Should not have field clones ...@@ -10,7 +10,7 @@ $ Should not have field clones
################################### ###################################
### Part with unsegmented clones ## ### Part with unsegmented clones ##
################################### ###################################
!LAUNCH: python3 ../../fuse.py -D --no-clones ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused.vidjil !LAUNCH: python3 ../../fuse.py -D --no-clones --output fused_with_unsegmented_clones_and_complete_distributions.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_with_unsegmented_clones_and_complete_distributions.vidjil
$ Get correct keys for distributions json content $ Get correct keys for distributions json content
...@@ -31,8 +31,7 @@ $ Correct number of entries for some keys (2*30 + 1 by repertoire) ...@@ -31,8 +31,7 @@ $ Correct number of entries for some keys (2*30 + 1 by repertoire)
############################ ############################
### Part with real clones ## ### Part with real clones ##
############################ ############################
!LAUNCH: rm fused.vidjil !LAUNCH: python3 ../../fuse.py -D --no-clones --output fused_with_real_clones_and_complete_distributions.vidjil ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_with_real_clones_and_complete_distributions.vidjil
!LAUNCH: python3 ../../fuse.py -D --no-clones ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused.vidjil
$ Get correct keys for distributions json content $ Get correct keys for distributions json content
1:"repertoires" 1:"repertoires"
...@@ -71,7 +70,6 @@ lr1:{ "axes": \[ "germline", "seg5" \], " ...@@ -71,7 +70,6 @@ lr1:{ "axes": \[ "germline", "seg5" \], "
#################################################### ####################################################
### Part with real clones, only some distribution ## ### Part with real clones, only some distribution ##
#################################################### ####################################################
!LAUNCH: rm fused.vidjil
!LAUNCH: python3 ../../fuse.py -d seg5,seg3 -d evalue -d unknow_AXIS --no-clones --output fused_only_some_axes.vidjil ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_only_some_axes.vidjil !LAUNCH: python3 ../../fuse.py -d seg5,seg3 -d evalue -d unknow_AXIS --no-clones --output fused_only_some_axes.vidjil ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_only_some_axes.vidjil
$ Get correct keys for distributions json content $ Get correct keys for distributions json content
......
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