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vidjil
vidjil
Commits
d83354ca
Commit
d83354ca
authored
Aug 23, 2019
by
Thonier Florian
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tools/tests; update some tmp files in should-get tests
Link to
#3944
parent
928d844f
Pipeline
#90714
failed with stage
in 7 seconds
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+3
-5
tools/tests/should-get-tests/fuse-with-distribution.should-get
.../tests/should-get-tests/fuse-with-distribution.should-get
+1
-1
tools/tests/should-get-tests/fuse-with-distribution_only.should-get
...s/should-get-tests/fuse-with-distribution_only.should-get
+2
-4
No files found.
tools/tests/should-get-tests/fuse-with-distribution.should-get
View file @
d83354ca
...
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@@ -25,5 +25,5 @@ $ should have two time 'distributions' (console log + into vidjil file)
2:distributions
$ Axis title should be present 122 times (2*
3
0+1/file)
$ Axis title should be present 122 times (2*
6
0+1/file)
122:lenCDR3
\ No newline at end of file
tools/tests/should-get-tests/fuse-with-distribution_only.should-get
View file @
d83354ca
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@@ -10,7 +10,7 @@ $ Should not have field clones
###################################
### Part with unsegmented clones ##
###################################
!LAUNCH: python3 ../../fuse.py -D --no-clones
../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused
.vidjil
!LAUNCH: python3 ../../fuse.py -D --no-clones
--output fused_with_unsegmented_clones_and_complete_distributions.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_with_unsegmented_clones_and_complete_distributions
.vidjil
$ Get correct keys for distributions json content
...
...
@@ -31,8 +31,7 @@ $ Correct number of entries for some keys (2*30 + 1 by repertoire)
############################
### Part with real clones ##
############################
!LAUNCH: rm fused.vidjil
!LAUNCH: python3 ../../fuse.py -D --no-clones ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused.vidjil
!LAUNCH: python3 ../../fuse.py -D --no-clones --output fused_with_real_clones_and_complete_distributions.vidjil ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_with_real_clones_and_complete_distributions.vidjil
$ Get correct keys for distributions json content
1:"repertoires"
...
...
@@ -71,7 +70,6 @@ lr1:{ "axes": \[ "germline", "seg5" \], "
####################################################
### Part with real clones, only some distribution ##
####################################################
!LAUNCH: rm fused.vidjil
!LAUNCH: python3 ../../fuse.py -d seg5,seg3 -d evalue -d unknow_AXIS --no-clones --output fused_only_some_axes.vidjil ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_only_some_axes.vidjil
$ Get correct keys for distributions json content
...
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