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vidjil
vidjil
Commits
d7302896
Commit
d7302896
authored
Apr 18, 2016
by
Mathieu Giraud
Browse files
task.py: mixcr, remove .vdjca files when there are no longer used
parent
fe822216
Changes
1
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server/web2py/applications/vidjil/models/task.py
View file @
d7302896
...
...
@@ -329,6 +329,7 @@ def run_mixcr(id_file, id_config, id_data, id_fuse, clean_before=False, clean_af
cmd
=
mixcr
+
' align --save-reads -t 1 -r '
+
align_report
+
' '
+
args_1
+
' '
+
seq_file
+
' '
+
out_alignments
cmd
+=
' && '
cmd
+=
mixcr
+
' assemble -t 1 -r '
+
assembly_report
+
' '
+
args_2
+
' '
+
out_alignments
+
' '
+
out_clones
cmd
+=
' && rm '
+
out_alignments
cmd
+=
' && '
cmd
+=
mixcr
+
' exportClones --format vidjil -germline -id -name -reads -sequence -top -seg -s '
+
args_3
+
' '
+
out_clones
+
' '
+
out_results
...
...
Vidjil Team
@vidjilteam
Mentioned in issue
#1928 (closed)
·
Nov 29, 2016
Mentioned in issue
#1928 (closed)
Mentioned in issue #1928
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