Commit d4034f77 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil.cpp: default -r is now 5

On the default file, Vidjil now returns some clones even with default options.
parent 6b3c13d8
...@@ -4,7 +4,7 @@ $ License ...@@ -4,7 +4,7 @@ $ License
1:Vidjil is free software 1:Vidjil is free software
$ Check default filtering options $ Check default filtering options
1:minimal number of reads supporting a clone .*: 10 1:minimal number of reads supporting a clone .*: 5
1:minimal percentage of reads supporting a clone .*: 0 1:minimal percentage of reads supporting a clone .*: 0
1:maximal number of clones computed with a representative .*: 100 1:maximal number of clones computed with a representative .*: 100
1:maximal number of clones to be segmented .*: 20 1:maximal number of clones to be segmented .*: 20
......
...@@ -69,8 +69,7 @@ ...@@ -69,8 +69,7 @@
#define DEFAULT_J_REP "./germline/IGHJ.fa" #define DEFAULT_J_REP "./germline/IGHJ.fa"
#define DEFAULT_READS "./data/Stanford_S22.fasta" #define DEFAULT_READS "./data/Stanford_S22.fasta"
#define MIN_READS_WINDOW 10 #define MIN_READS_CLONE 5
#define MIN_READS_CLONE 10
#define DEFAULT_MAX_REPRESENTATIVES 100 #define DEFAULT_MAX_REPRESENTATIVES 100
#define MAX_CLONES 20 #define MAX_CLONES 20
#define RATIO_READS_CLONE 0.0 #define RATIO_READS_CLONE 0.0
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment