From d4034f77809349dca197f00d4008b628ee1ac265 Mon Sep 17 00:00:00 2001 From: Mathieu Giraud Date: Mon, 3 Nov 2014 09:46:31 +0100 Subject: [PATCH] vidjil.cpp: default -r is now 5 On the default file, Vidjil now returns some clones even with default options. --- algo/tests/vidjil-help.should_get | 2 +- algo/vidjil.cpp | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/algo/tests/vidjil-help.should_get b/algo/tests/vidjil-help.should_get index d7dc56825..94120f562 100644 --- a/algo/tests/vidjil-help.should_get +++ b/algo/tests/vidjil-help.should_get @@ -4,7 +4,7 @@ $ License 1:Vidjil is free software $ Check default filtering options -1:minimal number of reads supporting a clone .*: 10 +1:minimal number of reads supporting a clone .*: 5 1:minimal percentage of reads supporting a clone .*: 0 1:maximal number of clones computed with a representative .*: 100 1:maximal number of clones to be segmented .*: 20 diff --git a/algo/vidjil.cpp b/algo/vidjil.cpp index 6d2c3e0c0..71602396f 100644 --- a/algo/vidjil.cpp +++ b/algo/vidjil.cpp @@ -69,8 +69,7 @@ #define DEFAULT_J_REP "./germline/IGHJ.fa" #define DEFAULT_READS "./data/Stanford_S22.fasta" -#define MIN_READS_WINDOW 10 -#define MIN_READS_CLONE 10 +#define MIN_READS_CLONE 5 #define DEFAULT_MAX_REPRESENTATIVES 100 #define MAX_CLONES 20 #define RATIO_READS_CLONE 0.0 -- GitLab