Mise à jour terminée. Pour connaître les apports de la version 13.8.4 par rapport à notre ancienne version vous pouvez lire les "Release Notes" suivantes :
https://about.gitlab.com/releases/2021/02/11/security-release-gitlab-13-8-4-released/
https://about.gitlab.com/releases/2021/02/05/gitlab-13-8-3-released/

Commit d3c9281a authored by Mathieu Giraud's avatar Mathieu Giraud

core/segment.{h,cpp}: 'segmented_germline' remembers the good germline

parent 579a1112
......@@ -168,6 +168,7 @@ KmerSegmenter::KmerSegmenter(Sequence seq, MultiGermline *multigermline)
info = "" ;
info_extra = "seed";
segmented = false;
segmented_germline = 0;
reversed = false;
Dend=0;
......@@ -216,6 +217,7 @@ KmerSegmenter::KmerSegmenter(Sequence seq, MultiGermline *multigermline)
if (segmented)
{
// Yes, it is segmented
segmented_germline = germline;
reversed = (strand == -1);
because = reversed ? SEG_MINUS : SEG_PLUS ;
......
......@@ -55,7 +55,7 @@ protected:
int best_V, best_J ;
int del_V, del_D_left, del_D_right, del_J ;
string seg_V, seg_N, seg_J;
int best_D;
string seg_N1, seg_D, seg_N2;
Cost segment_cost;
......@@ -133,6 +133,8 @@ class KmerSegmenter : public Segmenter
string affects;
public:
Germline *segmented_germline;
/**
* Build a segmenter based on KmerSegmentation
* @param seq: An object read from a FASTA/FASTQ file
......
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