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Commit d0ac8aee authored by Mathieu Giraud's avatar Mathieu Giraud Committed by Vidjil Team
Browse files

germline.cpp: reorder germlines

Here TRD and IGK are more often tested than the others, they should be tested
immediately after TRG and IGH.
parent 60aca0b3
...@@ -142,6 +142,14 @@ void MultiGermline::build_default_set(string path) ...@@ -142,6 +142,14 @@ void MultiGermline::build_default_set(string path)
germline->new_index("######-######"); germline->new_index("######-######");
germlines.push_back(germline); germlines.push_back(germline);
germline = new Germline("TRD", 'D', path + "/TRDV.fa", path + "/TRDD.fa", path + "/TRDJ.fa", 0, 80);
germline->new_index("#####-#####");
germlines.push_back(germline);
germline = new Germline("IGK", 'K', path + "/IGKV.fa", "", path + "/IGKJ.fa", -10, 20);
germline->new_index("#####-#####");
germlines.push_back(germline);
germline = new Germline("TRA", 'A', path + "/TRAV.fa", "", path + "/TRAJ.fa", -10, 20); germline = new Germline("TRA", 'A', path + "/TRAV.fa", "", path + "/TRAJ.fa", -10, 20);
germline->new_index("#######-######"); germline->new_index("#######-######");
...@@ -151,15 +159,6 @@ void MultiGermline::build_default_set(string path) ...@@ -151,15 +159,6 @@ void MultiGermline::build_default_set(string path)
germline->new_index("######-######"); germline->new_index("######-######");
germlines.push_back(germline); germlines.push_back(germline);
germline = new Germline("TRD", 'D', path + "/TRDV.fa", path + "/TRDD.fa", path + "/TRDJ.fa", 0, 80);
germline->new_index("#####-#####");
germlines.push_back(germline);
germline = new Germline("IGK", 'K', path + "/IGKV.fa", "", path + "/IGKJ.fa", -10, 20);
germline->new_index("#####-#####");
germlines.push_back(germline);
germline = new Germline("IGL", 'L', path + "/IGLV.fa", "", path + "/IGLJ.fa", -10, 20); germline = new Germline("IGL", 'L', path + "/IGLV.fa", "", path + "/IGLJ.fa", -10, 20);
germline->new_index("#####-#####"); germline->new_index("#####-#####");
germlines.push_back(germline); germlines.push_back(germline);
......
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