germline.cpp: reorder germlines

Here TRD and IGK are more often tested than the others, they should be tested immediately after TRG and IGH.

germline.cpp: reorder germlines
Here TRD and IGK are more often tested than the others, they should be tested immediately after TRG and IGH.
d0ac8aee · Mathieu Giraud · Vidjil Team · 60aca0b3 · d0ac8aee
Commit d0ac8aee authored Dec 03, 2014 by Mathieu Giraud Committed by Vidjil Team Dec 03, 2014
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Showing with 8 additions and 9 deletions

algo/core/germline.cpp algo/core/germline.cpp +8 -9

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--- a/algo/core/germline.cpp
+++ b/algo/core/germline.cpp
@@ -142,6 +142,14 @@ void MultiGermline::build_default_set(string path)
  germline->new_index("######-######");
  germlines.push_back(germline);

+  germline = new Germline("TRD", 'D', path + "/TRDV.fa", path + "/TRDD.fa",  path + "/TRDJ.fa",   0, 80);
+  germline->new_index("#####-#####");
+  germlines.push_back(germline);
+
+  germline = new Germline("IGK", 'K', path + "/IGKV.fa", "",  path + "/IGKJ.fa",  -10, 20);
+  germline->new_index("#####-#####");
+  germlines.push_back(germline);
+

  germline = new Germline("TRA", 'A', path + "/TRAV.fa", "",  path + "/TRAJ.fa",  -10, 20);
  germline->new_index("#######-######");
@@ -151,15 +159,6 @@ void MultiGermline::build_default_set(string path)
  germline->new_index("######-######");
  germlines.push_back(germline);

-  germline = new Germline("TRD", 'D', path + "/TRDV.fa", path + "/TRDD.fa",  path + "/TRDJ.fa",   0, 80);
-  germline->new_index("#####-#####");
-  germlines.push_back(germline);
-
-
-  germline = new Germline("IGK", 'K', path + "/IGKV.fa", "",  path + "/IGKJ.fa",  -10, 20);
-  germline->new_index("#####-#####");
-  germlines.push_back(germline);
-
  germline = new Germline("IGL", 'L', path + "/IGLV.fa", "",  path + "/IGLJ.fa",  -10, 20);
  germline->new_index("#####-#####");
  germlines.push_back(germline);