tests: update tests, SEG is now only for segmented sequences with windows

algo/tests/clones_lec.should_get

@@ -7,8 +7,8 @@ $ Find the good number of windows
 1: found 2 .* in 4 reads .* 7 reads
 
 $ Find the good statistics on TRG
-1: TRG .* -> .* 7 .* 84.0 .* 2 .* 2.0
+1: TRG .* -> .* 4 .* 117.0 .* 2 .* 2.0
 
 $ Find the good length statistics
-1: SEG_+.* 78.5
-1: SEG_-.* 91.3
\ No newline at end of file
+3: SEG.* 117.0
+1: UNSEG too short w.* 40.0

algo/tests/testSegment.cpp

@@ -228,10 +228,11 @@ void testExtractor() {
   we.setUnsegmentedOutput(&out_unseg);
 
   WindowsStorage *ws = we.extract(&data, multi, 30, labels);
+  // we.out_stats(cout);
 
   TAP_TEST(we.getNbReads() == 13, TEST_EXTRACTOR_NB_READS, "");
 
-  TAP_TEST(we.getNbSegmented(SEG_PLUS) == 4, TEST_EXTRACTOR_NB_SEGMENTED, "segPlus: " << we.getNbSegmented(SEG_PLUS));
+  TAP_TEST(we.getNbSegmented(SEG_PLUS) == 2, TEST_EXTRACTOR_NB_SEGMENTED, "segPlus: " << we.getNbSegmented(SEG_PLUS));
   TAP_TEST(we.getNbSegmented(SEG_MINUS) == 1, TEST_EXTRACTOR_NB_SEGMENTED, "");
   TAP_TEST(we.getNbSegmented(UNSEG_TOO_SHORT) == 1, TEST_EXTRACTOR_NB_SEGMENTED, "");
   TAP_TEST(we.getNbSegmented(UNSEG_STRAND_NOT_CONSISTENT) == 1, TEST_EXTRACTOR_NB_SEGMENTED, "");
@@ -243,7 +244,7 @@ void testExtractor() {
   TAP_TEST(we.getNbSegmented(UNSEG_TOO_SHORT_FOR_WINDOW) == 2, TEST_EXTRACTOR_NB_SEGMENTED, "");
   TAP_TEST(we.getNbSegmented(TOTAL_SEG_AND_WINDOW) == 3, TEST_EXTRACTOR_NB_SEGMENTED, "");
 
-  TAP_TEST(we.getAverageSegmentationLength(SEG_PLUS) == 41.25, TEST_EXTRACTOR_AVG_LENGTH, "average: " << we.getAverageSegmentationLength(SEG_PLUS));
+  TAP_TEST(we.getAverageSegmentationLength(SEG_PLUS) == 54, TEST_EXTRACTOR_AVG_LENGTH, "average: " << we.getAverageSegmentationLength(SEG_PLUS));
   TAP_TEST(we.getAverageSegmentationLength(SEG_MINUS) == 36, TEST_EXTRACTOR_AVG_LENGTH, "");
   TAP_TEST(we.getAverageSegmentationLength(UNSEG_TOO_SHORT) == 4, TEST_EXTRACTOR_AVG_LENGTH, "");
   TAP_TEST(we.getAverageSegmentationLength(UNSEG_STRAND_NOT_CONSISTENT) == 36, TEST_EXTRACTOR_AVG_LENGTH, "");