sample_set.py, sample_set/index.html decorate sample tags

server/web2py/applications/vidjil/controllers/sample_set.py

@@ -120,6 +120,7 @@ def index():
                 )
             )
 
+    tag_decorator = TagDecorator(get_tag_prefix())
     query_pre_process = db( db.pre_process.id >0 ).select()
     pre_process_list = {}
     for row in query_pre_process:
@@ -140,7 +141,8 @@ def index():
                 analysis_file = analysis_file,
                 analysis_filename = analysis_filename,
                 sample_type = db.sample_set[request.vars["id"]].sample_type,
-                config=config)
+                config=config,
+                tag_decorator=tag_decorator)
 
 ## return a list of generic sample_sets
 def all():

server/web2py/applications/vidjil/views/sample_set/index.html

@@ -82,7 +82,11 @@
                        {{if row.sequence_file.network:}}(N){{pass}}
                     </td>
                     <td> {{if row.sequence_file.sampling_date <> None:}} {{=row.sequence_file.sampling_date}} {{pass}}</td>
-                    <td> {{=row.sequence_file.info}} </td>
+                    <td> {{=XML(tag_decorator.decorate_text(row.sequence_file.info, 'tag', 'sequence_file', '/sample_set/custom'),
+                                sanitize=True,
+                                permitted_tags=['a'],
+                                allowed_attributes={'a':['class', 'href', 'onclick', 'data-sample-type', 'data-linkable-type', 'data-linkable-name']}
+                                )}} </td>
                     <td {{if row.sequence_file.data_file == None :}} {{=XML("class='inactive' title='file is missing' ")}} {{pass}} >
                         {{=vidjil_utils.format_size(row.sequence_file.size_file)}} </td>
                     {{ has_pre_process = row.sequence_file.pre_process_id != None}}