Use Filter object in testFilterBioReaderWithACAutomaton

Since the function testFilterBioReaderWithACAutomaton in testFilter was
using pair and not Filter object, it now use the filter object getter for
the pair.

For more informations see #3283.

algo/tests/unit-tests/testFilter.cpp

@@ -258,6 +258,7 @@ void testFilterBioReaderWithACAutomaton(){
   seqtype sequence1, sequence2, sequence3;
   BioReader testedBioReader1, testedBioReader2, testedBioReader3;
   BioReader filteredBioReader1, filteredBioReader2, filteredBioReader3;
+  FilterWithACAutomaton *f1, *f2, *f3;
 
   const string SIZE_ERROR =
       "The BioReader size must be less or equal than the original's size";
@@ -274,17 +275,16 @@ void testFilterBioReaderWithACAutomaton(){
   testedBioReader1 = getDebugBioReader1();
   testedBioReader2 = getDebugBioReader2();
   testedBioReader3 = getDebugBioReader3();
-  pair1 = buildACAutomatonToFilterBioReader(testedBioReader1, "####");
-  pair2 = buildACAutomatonToFilterBioReader(testedBioReader2, "####");
-  pair3 = buildACAutomatonToFilterBioReader(testedBioReader3, "####");
-
+  f1 = new FilterWithACAutomaton(testedBioReader1, "####");
+  f2 = new FilterWithACAutomaton(testedBioReader2, "####");
+  f3 = new FilterWithACAutomaton(testedBioReader3, "####");
+  pair1 = f1->getPair();
+  pair2 = f2->getPair();
+  pair3 = f3->getPair();
 
-  filteredBioReader1 = filterBioReaderWithACAutomaton
-                      (pair1, testedBioReader1, sequence1);
-  filteredBioReader2 = filterBioReaderWithACAutomaton
-                      (pair2, testedBioReader2, sequence2);
-  filteredBioReader3 = filterBioReaderWithACAutomaton
-                      (pair3, testedBioReader3, sequence3);
+  filteredBioReader1 = f1->filterBioReaderWithACAutomaton(testedBioReader1, sequence1);
+  filteredBioReader2 = f2->filterBioReaderWithACAutomaton(testedBioReader2, sequence2);
+  filteredBioReader3 = f3->filterBioReaderWithACAutomaton(testedBioReader3, sequence3);
 
   //check filteredBioReader size
   TAP_TEST(filteredBioReader1.size() <= testedBioReader1.size(),