Commit c91ad79a authored by Mikaël Salson's avatar Mikaël Salson Committed by Mathieu Giraud

0000-nck-TRA+D.should-vdj.fa: Expertise annotations

BUG → TODO

Should we keep the two first sequences as there is one very short D (3nt) each
time?

Only the two last sequences were checked by myself.
parent 6396d87a
######################################
# VDDJ non detecte
# VDDJ detection
# /9 TRDD3 1/ -> 13-9-1 = 3nt, too short
>TRDV2 7/2/4 TRDD2 0/0/9 TRDD3 1/1/31 TRAJ29 [TRD] TODO
......@@ -9,8 +9,8 @@ AcgagaaaaggacatctatgGCCCTGGTTTCAAagacAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTAC
>TRDV2 3/0/3 TRDD2 3/2/0 TRDD3 1/2/3 TRAJ29 [TRD] TODO
TGGTTTNAAgacaaTTTCcaAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTtaAgATACTTGCaCCATCAgAgAGAGATgAaGGGTCTtACtaCTGTGCCTGTGACtCCCCACtGGGGGATACCTATTCAGGAAACACACCTcTTGTcTTTGGAAaGGGCACAAgAcTTTCTGTGATTGCAAGTAAgTGTTTCTAgCcaTCCTTGATTTTGATcagCAatGGCTTCTTCCCTTGAATTATTTTTCaGTGTACCTAgaATGCtTTTgCCA
>TRDV1 0/18/2 TRDD2 0/5/0 TRDD3 4/7/11 TRAJ29 [TRD] TODO
>TRDV1 0/AGTGCGGAGGGGCGGAACT/2 TRDD2 0/GTTTT/0 TRDD3 4/ACCCAGC/11 TRAJ29 [TRD] BUG
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTAGtGCGGAGGGGCGGAACTTTCCTACGTTTTACTGGGGGAACCCAgCaacacacctcttgtctttggaaagggcacaagactttctgtgattgcaagtaagtgtttctagccatccttgattttgatcagcaatggcttcttcccttgaattatttttcagtgtacctagaatgccttttgcccccaagaaaggtttggaaggagctgggtcattagcattgcgcaggaaattacaggttattctgttataattcgaagccactggacagtcatgatgcacacagatctggcctgcattgcacctggctagtgctcagtgtgtagctatctgagctctgatgtaagt
>TRAV29/DV5*01 3/8/3 TRDD2 1/0/3 TRDD3 0/0/2 TRDJ1 [TRD+] TODO
>TRAV29/DV5*01 3/CACCGAGA/3 TRDD2 1/0/3 TRDD3 0/0/2 TRDJ1 [TRD+] BUG
cattAggtAAAAATGaagatGGAAGATTCACTGTCTTCTTAAACAAAAGTGCCAAGCACCtctcTctGCACATTGTGCCCTCCCAGCCTGGAGACTCTGCAGTGTACTTCTGTGCAGCAACACCGAGATCCTAGGGGGATACgACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGgAACa
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