Commit c8867e64 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

controllers/default.py: reword config to keep segmented reads

See #1671.
parent 5f6b6753
...@@ -110,11 +110,11 @@ def init_db_helper(force=False, admin_email="plop@plop.com", admin_password="123 ...@@ -110,11 +110,11 @@ def init_db_helper(force=False, admin_email="plop@plop.com", admin_password="123
## base Vidjil configs ## base Vidjil configs
db.config.insert( db.config.insert(
name = 'multi+inc+xxx+keep', name = 'default + extract reads',
program = 'vidjil', program = 'vidjil',
command = '-c clones -3 -z 100 -r 1 -g germline/homo-sapiens.g -e 1 -2 -d -w 50 -U ', command = '-c clones -3 -z 100 -r 1 -g germline/homo-sapiens.g -e 1 -2 -d -w 50 -U ',
fuse_command = '-t 100', fuse_command = '-t 100',
info = 'multi-locus, with some incomplete/unusual/unexpected recombinations, keep analyzed reads' info = 'Same than than the default "multi+inc+xxx" (multi-locus, with some incomplete/unusual/unexpected recombinations), and extract analyzed reads in the "out" temporary directory.'
) )
db.config.insert( db.config.insert(
name = 'multi+inc+xxx', name = 'multi+inc+xxx',
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment