vidjil.cpp: load incomplete germlines '-i' at the end, ignoring '-1'/'-2'
Loading incomplete germlines in the same index may give some problems, as the same sequences will be loaded several times with different roles, leading to AFFECT_AMBIGUOUS affectations. We thus ignore the '-1' setting for incomplete germlines, and do not consider these germline for MAX12 ('-2'). Now '-i' should work with '-1' and/or '-2', and the previous test passes.
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