Commit c694636a authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

vidjil.cpp: species in json output

Fixes #1987.
parent 101e2d3c
......@@ -1577,6 +1577,9 @@ int main (int argc, char **argv)
// Complete main json output
j["species"] = multigermline->species ;
j["species_taxon_id"] = multigermline->species_taxon_id ;
j["diversity"] = jsonDiversity ;
j["samples"]["log"] = { stream_segmentation_info.str() } ;
j["reads"] = {
......
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