Commit c2d3fafe authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

tests: merge -r/-R options into a unique -r option

parent ee7acbae
!LAUNCH: ../../vidjil -k 14 -w 50 -c clones -G ../../germline/IGH -x -r 1 -R 1 -d ../../data/clones_simul.fa
!LAUNCH: ../../vidjil -k 14 -w 50 -c clones -G ../../germline/IGH -x -r 1 -d ../../data/clones_simul.fa
$ Junction extractions
1:found 25 50-windows in 66 segments
......
!LAUNCH: ../../vidjil -k 14 -w 50 -c clones -G ../../germline/IGH -x -r 1 -R 5 -n 5 -d ../../data/clones_simul.fa
!LAUNCH: ../../vidjil -k 14 -w 50 -c clones -G ../../germline/IGH -x -r 1 -n 5 -d ../../data/clones_simul.fa
$ Window extractions
1:found 25 50-windows in 66 segments
......
!LAUNCH: ../../vidjil -k 9 -G ../../germline/IGH -d -% 0.001 -r 4 -R 4 -c clones ../../data/Stanford_S22.fasta > vidjil_s22.log && ../../vidjil -k 9 -G ../../germline/IGH -d -% 0.001 -r 4 -R 4 -c clones ../../data/Stanford_S22.rc.fasta > vidjil_s22_rc.log && diff vidjil_s22.log vidjil_s22_rc.log
!LAUNCH: ../../vidjil -k 9 -G ../../germline/IGH -d -% 0.001 -r 4 -c clones ../../data/Stanford_S22.fasta > vidjil_s22.log && ../../vidjil -k 9 -G ../../germline/IGH -d -% 0.001 -r 4 -c clones ../../data/Stanford_S22.rc.fasta > vidjil_s22_rc.log && diff vidjil_s22.log vidjil_s22_rc.log
$ Same number segmented
0:==> segmented
......
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