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Commit c2c188c7 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: NO_EXTRA for tests on other programs than vidjil-algo

see #3762
parent 4eb9e704
Pipeline #65888 passed with stages
in 29 minutes and 3 seconds
!NO_EXTRA:
!LAUNCH: export REQUEST_METHOD=POST ; export CONTENT_TYPE=test ; $LAUNCHER $VIDJIL_DIR/tools/align.cgi < $VIDJIL_DATA/msa.fa
$ no spurious info
......
!NO_EXTRA:
!LAUNCH: export REQUEST_METHOD=POST ; export CONTENT_TYPE=test ; $LAUNCHER $VIDJIL_DIR/tools/align.cgi < $VIDJIL_DATA/msa2.fa
$ no spurious info
......
!NO_EXTRA:
!LAUNCH: export REQUEST_METHOD=POST ; export CONTENT_TYPE=test ; $LAUNCHER $VIDJIL_DIR/tools/align.cgi < $VIDJIL_DATA/msa3.fa
$ no spurious info
......
!NO_EXTRA:
!LAUNCH: ../../tools/align -m 1 -i 2 -j 1 -x $VIDJIL_DATA/trd-dd2-dd3.fa $VIDJIL_DIR/germline/homo-sapiens/TRDD.fa
$ Load correct sequences
......
!NO_EXTRA:
!LAUNCH: ../../tools/align -m 6 -i 0 -j 1 $VIDJIL_DATA/msa.fa
$ Default cost and parameters
......
!NO_EXTRA:
!LAUNCH: ../../tools/similarity $VIDJIL_DATA/msa.fa
$ Read 3 sequences
......
!NO_EXTRA:
!LAUNCH: echo "CCGAGGACACAGCCGTGTATTTTTTCCCCTAGTGGTTGCCCCTTTGACTACTGGGGCCAGGGAACC" | ../../tools/vdj_assign - $VIDJIL_DIR/germline/homo-sapiens/IGH V J "IGHV3-15*01" "IGHJ4*02"
$ Compute correct coordinates
......
!NO_EXTRA:
!LAUNCH: ../../tools/vdj_assign CCGAGGACACAGCCGTGTATTTTTTCCCCTAGTGGTTGCCCCTTTGACTACTGGGGCCAGGGAACC $VIDJIL_DIR/germline/homo-sapiens/IGH V J IGHV IGHJ
$ Compute correct coordinates
......
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