Commit c0e55e80 authored by Mathieu Giraud's avatar Mathieu Giraud
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vidjil: release 2016.08

parent 21a2a5f3
This changelog concerns the algorithmic part (C++) of Vidjil.
2016-08-XX The Vidjil Team
2016-08-06 The Vidjil Team
* New computation of average quality for each representative sequence, inside its window (core/representative.cpp)
* New option (-E) to set the e-value for FineSegmenter D segment detection (vidjil.cpp)
* Safer e-value estimation for D segments (vidjil.cpp)
* Raised capacity to 2*10^9 reads (core/segment.cpp, core/fasta.cpp)
* Better filtering/debug options (-u/-uu/-uuu), keeping interesting reads (vidjil.cpp, core/windowExtractor.cpp)
* Better .vdj.fa header for irregular/incomplete recombinations, 1-based positions (core/segment.cpp)
* Bugs closed (-u files, similarity in .vidjil)
* New and updated unit and functional tests, checking again .should-vdj tests
2016-07-13 The Vidjil Team
* New json 2016b format, renamed fields 'seg.{5,4,3,evalue}' and 'diversity', 1-based positions (core/segment.cpp)
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