Commit bd5c5ee2 authored by Mikaël Salson's avatar Mikaël Salson Committed by Mathieu Giraud

Tests: Increasing delta_max allows to segment more reads

parent acb07b3d
!LAUNCH: ../../vidjil -k 14 -w 50 -c clones -G ../../germline/IGH -x -r 1 -R 1 -d ../../data/clones_simul.fa
$ Junction extractions
1:found 22 50-windows in 63 segments
1:found 25 50-windows in 66 segments
$ No clustering
1:==> 22 clones
1:==> 25 clones
$ Clone 1 output
1:Clone #001 .* 29 reads
......
!LAUNCH: ../../vidjil -k 14 -w 50 -c clones -G ../../germline/IGH -x -r 1 -R 5 -n 5 -d ../../data/clones_simul.fa
$ Window extractions
1:found 22 50-windows in 63 segments
1:found 25 50-windows in 66 segments
$ Some clustering
1:==> 2 clones
......@@ -10,6 +10,6 @@ $ Clone 1 output
1:Clone #001 .* 36 reads
$ Clone 2 output
1:Clone #002 .* 22 reads
1:Clone #002 .* 23 reads
......@@ -11,5 +11,5 @@ $ Parses germline/IGHJ.fa
1: 701 bp in 13 sequences
$ Find the good number of windows in Stanford S22 (contiguous seed 14)
1: found 10454 60-windows in 12583 segments
1: found 10901 60-windows in 13101 segments
......@@ -14,7 +14,7 @@ $ Find the good number of "too short sequences" for windows of size 100
1: SEG, but no window -> 2052
$ Find the good number of segmented sequences (including "too short sequences")
1: segmented 11216 reads .85.3%.
1: segmented 11311 reads .86%.
$ Find the good number of windows of size 100 in Stanford S22
1: found 8224 100-windows in 9164 segments
1: found 8314 100-windows in 9259 segments
......@@ -11,5 +11,5 @@ $ Parses germline/IGHJ.fa
1: 701 bp in 13 sequences
$ Find the good number of windows in Stanford S22
1: found 10413 60-windows in 12532 segments
1: found 10701 60-windows in 12866 segments
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