Commit bd5c5ee2 by Mikaël Salson Committed by Mathieu Giraud

### Tests: Increasing delta_max allows to segment more reads

parent acb07b3d
 !LAUNCH: ../../vidjil -k 14 -w 50 -c clones -G ../../germline/IGH -x -r 1 -R 1 -d ../../data/clones_simul.fa \$ Junction extractions 1:found 22 50-windows in 63 segments 1:found 25 50-windows in 66 segments \$ No clustering 1:==> 22 clones 1:==> 25 clones \$ Clone 1 output 1:Clone #001 .* 29 reads ... ...
 !LAUNCH: ../../vidjil -k 14 -w 50 -c clones -G ../../germline/IGH -x -r 1 -R 5 -n 5 -d ../../data/clones_simul.fa \$ Window extractions 1:found 22 50-windows in 63 segments 1:found 25 50-windows in 66 segments \$ Some clustering 1:==> 2 clones ... ... @@ -10,6 +10,6 @@ \$ Clone 1 output 1:Clone #001 .* 36 reads \$ Clone 2 output 1:Clone #002 .* 22 reads 1:Clone #002 .* 23 reads
 ... ... @@ -11,5 +11,5 @@ \$ Parses germline/IGHJ.fa 1: 701 bp in 13 sequences \$ Find the good number of windows in Stanford S22 (contiguous seed 14) 1: found 10454 60-windows in 12583 segments 1: found 10901 60-windows in 13101 segments
 ... ... @@ -14,7 +14,7 @@ \$ Find the good number of "too short sequences" for windows of size 100 1: SEG, but no window -> 2052 \$ Find the good number of segmented sequences (including "too short sequences") 1: segmented 11216 reads .85.3%. 1: segmented 11311 reads .86%. \$ Find the good number of windows of size 100 in Stanford S22 1: found 8224 100-windows in 9164 segments 1: found 8314 100-windows in 9259 segments
 ... ... @@ -11,5 +11,5 @@ \$ Parses germline/IGHJ.fa 1: 701 bp in 13 sequences \$ Find the good number of windows in Stanford S22 1: found 10413 60-windows in 12532 segments 1: found 10701 60-windows in 12866 segments
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