Commit bad5f0a2 authored by Thonier Florian's avatar Thonier Florian
Browse files

fuse; special loop for clonotype warnings

Allow to not have empty value '{}' at concatenation between sample with/without warnings for a given clonotype
parent 7ec75b6c
Pipeline #728533 failed with stages
in 24 minutes and 25 seconds
......@@ -200,7 +200,7 @@ class Window:
def __add__(self, other):
"""Concat two windows, extending lists such as 'reads'"""
#data we don't need to duplicate
myList = [ "seg", "top", "id", "sequence", "name", "id", "stats", "germline", "mrd"]
myList = [ "seg", "top", "id", "sequence", "name", "id", "stats", "germline", "mrd", "warn"]
obj = Window(1)
# 'id' and 'top' will be taken from 'topmost' clone
......@@ -218,6 +218,14 @@ class Window:
"R2": [0],
"family": ["None"],
"norm_coeff": [0]}
if "warn" in self.d or "warn" in other.d:
obj.d["warn"] = []
for source in [self, other]:
if "warn" in source.d:
for warn in source.d["warn"]:
if "mrd" in self.d or "mrd" in other.d:
if "mrd" in self.d:
first = self.d["mrd"]
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