segmenter.js : toIgBlast/toImgt debug + handle all system (not only TRG nad IGH)

browser/js/crossDomain.js

@@ -87,10 +87,10 @@ igBlastInput["seqtype"] = "TCR";
 function imgtPost(data, system) {
 
     imgtInput["l01p01c10"] = data;
-    if (system == "IGH") {
+    if (system[0] == "I") {
         imgtInput["l01p01c04"] = "IG";
     }
-    if (system == "TRG") {
+    if (system[0] == "T") {
         imgtInput["l01p01c04"] = "TR";
     }
     var form = document.getElementById("form");
@@ -114,12 +114,12 @@ function imgtPost(data, system) {
 function igBlastPost(data, system) {
 
     igBlastInput["queryseq"] = data;
-    if (system == "IGH") {
+    if (system[0] == "I") {
         igBlastInput["germline_db_V"] = "IG_DB/imgt.Homo_sapiens.V.f.orf.p";
         igBlastInput["germline_db_D"] = "IG_DB/imgt.Homo_sapiens.D.f.orf";
         igBlastInput["germline_db_J"] = "IG_DB/imgt.Homo_sapiens.J.f.orf";
     }
-    if (system == "TRG") {
+    if (system[0] == "T") {
         igBlastInput["germline_db_V"] = "IG_DB/imgt.TR.Homo_sapiens.V.f.orf.p";
         igBlastInput["germline_db_D"] = "IG_DB/imgt.TR.Homo_sapiens.D.f.orf";
         igBlastInput["germline_db_J"] = "IG_DB/imgt.TR.Homo_sapiens.J.f.orf.p";

browser/js/segmenter.js

@@ -336,7 +336,8 @@ Segment.prototype = {
     sendTo: function (address) {
 
         var list = this.m.getSelected()
-        var request, system;
+        var request = ""
+        var system;
         var max=0;
 
         for (var i = 0; i < list.length; i++) {
@@ -348,11 +349,10 @@ Segment.prototype = {
                 request += ">" + c.getName() + "\n" + c.id + "\n";
             }
             if (c.getSize()>max){
-                system=c.system
+                system=c.getSystem()
                 max=c.getSize()
             }
         }
-
         if (address == 'IMGT') imgtPost(request, system);
         if (address == 'igBlast') igBlastPost(request, system);