Commit b5d04576 authored by Mathieu Giraud's avatar Mathieu Giraud
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vidjil: release 2014.10

parent b83d868c
This changelog concerns the algorithmic part (C++) of Vidjil.
2014-10-XX The Vidjil Team
2014-10-22 The Vidjil Team
* Streamlined filtering options (-r/-y/-z), better documented (doc/algo.org)
* Streamlined output files (xxxxxxxxxx)
* Updated .data .json output, now in the stable 2014.10 format (documented in doc/format-analysis.org)
* Streamlined output files, option to fix their basename (-b)
* Updated .data .json output, now in the better documented 2014.10 format (doc/format-analysis.org)
* New experimental multi-germline analysis (-g). This will be improved and documented in a next release.
* Faster FineSegmenter with a better memory allocation (core/dynprog.cpp)
* Refactored main vidjil.cpp, objects storing germlines and statistics (core/germline.cpp, core/stats.cpp)
* Transferred clustering from clone output to information in .data, again simplifying vidjil.cpp
* Removed unused code parts as well as some files
* New and updated unit and functional tests
* Bugs closed
2014-09-23 The Vidjil Team
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