Commit b45da30e authored by Mathieu Giraud's avatar Mathieu Giraud

tests: CDR3/JUNCTION, borderline cases, indels close to positions 104/118

parent 4a584959
# Test borderline cases for CDR3/JUNCTION with indels close to positions 104/118.
>TRGV1*01 0/AA/0 TRGJ1*01 [TRG] {CATWDRKNYYKKLF}
ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacaggAA
gaattattataagaaactctttggcagtggaacaacactggttgtcacag
# One A inserted after the end of Cys104 -> other frame for V
>TRGV1*01 0/A/0 TRGJ1*01 [TRG] {CSHLGQENYYKKLF}
ctgcaaaatctaattaaaaatgattctgggttctattactgtAgccacctgggacaggA
gaattattataagaaactctttggcagtggaacaacactggttgtcacag
# One G deleted after the end of Cys104 -> other frame for V
>TRGV1*01 0/AAA/0 TRGJ1*01 [TRG] {CPPGTGKNYYKKLF}
ctgcaaaatctaattaaaaatgattctgggttctattactgtccacctgggacaggAAA
gaattattataagaaactctttggcagtggaacaacactggttgtcacag
# One A inserted before the start of Phe118 -> other frame for J
>TRGV1*01 0/A/0 TRGJ1*01 [TRG] {CATWDRRIIIRNSF}
ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacaggA
gaattattataagaaactcAtttggcagtggaacaacactggttgtcacag
# One T deleted before the start of Phe118 -> other frame for J
>TRGV1*01 0/AAA/0 TRGJ1*01 [TRG] {ATWDRKELL*ETF}
ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacaggAAA
gaattattataagaaacttttggcagtggaacaacactggttgtcacag
# There could also be tests with an indel inside Cys104 or Phe118,
# but it would be difficult to assert what should be the right answer
# in these cases.
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment