Commit b43f8672 authored by Mikaël Salson's avatar Mikaël Salson
Browse files

germlines: TRDD2*01 and TRDD3*01 are not retrieved from IMGT

For DD2/DD3 recombinations we need respectively upstream and downstream sequences of the two genes.
They are not included in IMGT, therefore we retrieve them from NCBI
parent 27cabf5a
......@@ -8,3 +8,6 @@ python *.fa ../browser/js/germline.js
wget -N
wget -N
wget -q -O - '' | sed '1s/>gb\|/>gb|TRDD2*01/' > TRDD2-01.fa
wget -q -O - '' | sed '1s/>gb\|/>gb|TRDD3*01/' > TRDD3-01.fa
......@@ -29,8 +29,6 @@ def verbose_open_w(name):
# Create isolated files for some sequences
for l in sys.stdin:
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment