Commit b3fe8c6d authored by Mathieu Giraud's avatar Mathieu Giraud

tests: new test, the FineSegmenter should not segment when the V/J regions are too short

multi-tiny.fa is a shortened version of multi-short.fa,
with only 10 bp at the end of V and at the start of J.
parent 434fdedf
!LAUNCH: ../../vidjil -c segment -g ../../germline ../../data/multi-tiny.fa
$ Do not segment any of the seven reads
7:UNSEG
>TRA--V1-1*01--J1*01
ctgtgagaga
gtatgaaagt
>TRB--V1*01--D1*01--J1-1*01
gcagccaaga
gggacagggggc
tgaacactga
>TRG--V1*01--J1*01
ctgggacagg
gaattattat
>TRD--V1*01--D1*01--J1*01
ttggggaact
gaaatagt
acaccgataa
>IGH--V1-18*01--D1-1*01--J1*01
gtgcgagaga
ggtacaactggaacgac
gctgaatact
>IGK--V1-12*01--J1*01
gtttccctcc
gtggacgttc
>IGL--V1-36*01--J1*01
tgaatggtcc
ttatgtcttc
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