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vidjil
vidjil
Commits
b3dd524b
Commit
b3dd524b
authored
Sep 13, 2017
by
Mathieu Giraud
Browse files
doc/algo.org: use again S22, but on only 50 reads
parent
0f933f32
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b3dd524b
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@@ -747,8 +747,8 @@ This file will be relatively small (a few kB or MB) and can be taken again as an
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@@ -747,8 +747,8 @@ This file will be relatively small (a few kB or MB) and can be taken again as an
#+END_SRC
#+END_SRC
#+BEGIN_SRC sh
#+BEGIN_SRC sh
./vidjil -c segment -g germline/homo-sapiens.g -2 -3 -d
demo/segment
_S22.fa
./vidjil -c segment -g germline/homo-sapiens.g -2 -3 -d
-x 50 demo/Stanford
_S22.fa
sta
# Detailed V(D)J designation, including multiple D, and CDR3 detection on
all
reads, without clone clustering
# Detailed V(D)J designation, including multiple D, and CDR3 detection on
the first 50
reads, without clone clustering
# (this is slow and should only be used for testing, or on a small file)
# (this is slow and should only be used for testing, or on a small file)
#+END_SRC
#+END_SRC
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