Commit b3dd524b authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

doc/algo.org: use again S22, but on only 50 reads

parent 0f933f32
...@@ -747,8 +747,8 @@ This file will be relatively small (a few kB or MB) and can be taken again as an ...@@ -747,8 +747,8 @@ This file will be relatively small (a few kB or MB) and can be taken again as an
#+END_SRC #+END_SRC
#+BEGIN_SRC sh #+BEGIN_SRC sh
./vidjil -c segment -g germline/homo-sapiens.g -2 -3 -d demo/segment_S22.fa ./vidjil -c segment -g germline/homo-sapiens.g -2 -3 -d -x 50 demo/Stanford_S22.fasta
# Detailed V(D)J designation, including multiple D, and CDR3 detection on all reads, without clone clustering # Detailed V(D)J designation, including multiple D, and CDR3 detection on the first 50 reads, without clone clustering
# (this is slow and should only be used for testing, or on a small file) # (this is slow and should only be used for testing, or on a small file)
#+END_SRC #+END_SRC
......
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