From b34cc22d4eb564f9416098ba75b1d55ca0ad00b7 Mon Sep 17 00:00:00 2001
From: Mathieu Giraud <mathieu@vidjil.org>
Date: Fri, 10 Jun 2016 21:56:13 +0200
Subject: [PATCH] core/segment.cpp: JUNCTION{start,end} initialization

Thanks to Valgrind
---
 algo/core/segment.cpp | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/algo/core/segment.cpp b/algo/core/segment.cpp
index 5da76bb65..433388630 100644
--- a/algo/core/segment.cpp
+++ b/algo/core/segment.cpp
@@ -368,6 +368,9 @@ KmerSegmenter::KmerSegmenter(Sequence seq, Germline *germline, double threshold,
   CDR3start = -1;
   CDR3end = -1;
 
+  JUNCTIONstart = -1;
+  JUNCTIONend = -1;
+
   label = seq.label ;
   sequence = seq.sequence ;
   info = "" ;
@@ -864,6 +867,9 @@ FineSegmenter::FineSegmenter(Sequence seq, Germline *germline, Cost segment_c,
   CDR3start = -1;
   CDR3end = -1;
 
+  JUNCTIONstart = -1;
+  JUNCTIONend = -1;
+
   bool reverse_V = false ;
   bool reverse_J = false ;
 
-- 
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