Commit b2aa6098 authored by Mikaël Salson's avatar Mikaël Salson Committed by Vidjil Team

Server: Config options are placed at the end

Placing options at the end allows to override default options.
On the contrary if options are placed at the beginning we have no way
to modify default behaviour.
parent 6e3e2591
......@@ -82,7 +82,7 @@ def run_vidjil(id_file, id_config, id_data, id_fuse):
vidjil_germline = db.config[id_config].germline
## commande complete
cmd = vidjil_path+'/vidjil ' + vidjil_cmd + ' -o ' + out_folder + ' -G ' + germline_folder + vidjil_germline + ' '+ seq_file
cmd = vidjil_path+'/vidjil ' + ' -o ' + out_folder + ' -G ' + germline_folder + vidjil_germline + ' '+ vidjil_cmd+' '+ seq_file
## execute la commande vidjil
p = Popen(cmd, shell=True, stdin=PIPE, stdout=PIPE, stderr=STDOUT, close_fds=True)
......
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