Commit b22be0a9 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/ remove obsolete '-m'

See #1674.
parent b5fce172
......@@ -434,11 +434,6 @@ and when the sequence does not contain any in-frame stop codons.
The advanced =-f= option sets the parameters used in the comparisons between
the clone sequence and the V(D)J germline genes. The default values should work.
The advanced =-m= option controls the minimum difference of positions between the end
of the V and the start of the J. Note that it is even possible to set =-m -10=
(meaning that V and J could overlap 10 bp). This is the default for VJ recombinations
(except when using a =germline/*.g= file).
The e-value set by =-e= is also applied to the V/J designation.
The =-E= option further sets the e-value for the detection of D segments.
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment