update usages of SampleSetList to use helpers

server/web2py/applications/vidjil/controllers/sample_set.py

@@ -280,13 +280,14 @@ def stats():
     search, tags = parse_search(request.vars["filter"])
     group_ids = get_involved_groups()
 
-    list = SampleSetList(type, tags=tags)
+    factory = ModelFactory()
+    helper = factory.get_instance(type=type)
+
+    list = SampleSetList(helper, tags=tags)
     list.load_sample_information()
     list.load_anon_permissions()
     result = list.get_values()
 
-    factory = ModelFactory()
-    helper = factory.get_instance(type=type)
     fields = helper.get_reduced_fields()
 
     ##sort result

server/web2py/applications/vidjil/tests/unit/models/SampleSetList.py

@@ -16,11 +16,15 @@ class SamplesetlistModel(unittest.TestCase):
         auth.login_bare("test@vidjil.org", "123456")
 
     def testInit(self):
-        slist = SampleSetList('patient')
+        factory = ModelFactory()
+        helper = factory.get_instance(type='patient')
+        slist = SampleSetList(helper)
         self.assertTrue(len(slist.element_ids) > 0, "The sample set list was not expected to be empty")
 
     def testCreatorNames(self):
-        slist = SampleSetList('patient')
+        factory = ModelFactory()
+        helper = factory.get_instance(type='patient')
+        slist = SampleSetList(helper)
         slist.load_creator_names()
         values = slist.get_values() 
         first = values[0]
@@ -28,7 +32,9 @@ class SamplesetlistModel(unittest.TestCase):
         self.assertFalse(name == "", "load_creator_names failed to retrieve a username")
 
     def testPermittedGroups(self):
-        slist = SampleSetList('patient')
+        factory = ModelFactory()
+        helper = factory.get_instance(type='patient')
+        slist = SampleSetList(helper)
         slist.load_permitted_groups()
         value = slist.get_values()[0]
         groups = value.groups
@@ -38,7 +44,9 @@ class SamplesetlistModel(unittest.TestCase):
         self.assertFalse(group_list == [], "load_permitted_groups found groups although the group_list is empty")
 
     def testAnonPermissions(self):
-        slist = SampleSetList('patient')
+        factory = ModelFactory()
+        helper = factory.get_instance(type='patient')
+        slist = SampleSetList(helper)
         slist.load_anon_permissions()
         value = slist.get_values()[0]