Commit aec85525 authored by Mathieu Giraud's avatar Mathieu Giraud

browser.org: absolute links for live usage on rbx.vidjil.org

parent 3501b716
......@@ -19,11 +19,11 @@ The Vidjil browser runs in any modern browser. It has been successfully tested o
** The .vidjil files
The vidjil browser displays .vidjil files that summarize the V(D)J
The vidjil browser displays =.vidjil= files that summarize the V(D)J
rearrangements and the sequences found in a run.
If you have an access to the patient database, you are able to upload,
manage, process your runs (.fasta/.fastq or .clntab files) directly on the browser
manage, process your runs (=.fasta=, =.fastq= or =.clntab= files) directly on the browser
(see below 'patient database'), and the server behind the patient
database computes these .vidjil files.
Otherwise, such .vidjil files can be obtained:
......@@ -31,8 +31,8 @@ Otherwise, such .vidjil files can be obtained:
http://www.vidjil.org/submit.html or using any other method
(e.g. your own FTP)
- from the command-line version of Vidjil (starting from
.fasta/.fastq files, see doc/algo.org in the command-line version).
To gather several .vidjil files, you have to use the [[../server/fuse.py][fuse.py]] script
=.fasta= or =.fastq= files, see [[http://git.vidjil.org/blob/master/doc/algo.org][algo.org]])
To gather several .vidjil files, you have to use the [[http://git.vidjil.org/blob/master/server/fuse.py][fuse.py]] script
- or by post-processing of other V(D)J analysis pipelines (contact us
if you are interested)
......
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