Commit ae5a9f5e authored by Mathieu Giraud's avatar Mathieu Giraud

doc/*: links to library preparation and sequencing

vdj#945
parent 4fcfb973
......@@ -6,7 +6,9 @@
sequencing data from lymphocytes.** [V(D)J recombinations](http://en.wikipedia.org/wiki/V\(D\)J_recombination) in lymphocytes are
essential for immunological diversity. They are also useful markers of
pathologies, and in leukemia, are used to quantify the minimal residual
disease during patient follow-up. High-throughput sequencing (NGS/HTS) now
disease during patient follow-up.
With adapted [library preparation and sequencing](locus.md),
high-throughput sequencing (NGS/HTS) now
enables the deep sequencing of a lymphoid population with dedicated [Rep-Seq](http://omictools.com/rep-seq-c424-p1.html)
methods and software.
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......@@ -3,7 +3,8 @@
Vidjil is an open-source platform for the analysis of high-throughput sequencing data from lymphocytes.
[V(D)J recombinations](http://en.wikipedia.org/wiki/V\(D\)J_recombination) in lymphocytes are essential for immunological diversity.
They are also useful markers of pathologies, and in leukemia, are used to quantify the minimal residual disease during patient follow-up.
High-throughput sequencing (NGS/HTS) now enables the deep sequencing of a lymphoid population with dedicated [Rep-Seq](http://omictools.com/rep-seq-c424-p1.html) methods and software.
With adapted [library preparation and sequencing](http://www.vidjil.org/doc/locus),
high-throughput sequencing (NGS/HTS) now enables the deep sequencing of a lymphoid population with dedicated [Rep-Seq](http://omictools.com/rep-seq-c424-p1.html) methods and software.
This is the help of the [Vidjil web application](http://app.vidjil.org/).
Further help can always be asked to <support@vidjil.org>. We can also arrange phone or video meeting.
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......@@ -26,6 +26,8 @@ Other documentation (users and administrators of the web application, developper
diversity. They are also useful markers of pathologies, and in
leukemia, are used to quantify the minimal residual disease during
patient follow-up.
With adapted [library preparation and sequencing](http://www.vidjil.org/doc/locus),
high-throughput sequencing (NGS/HTS) now enables the deep sequencing of a lymphoid population with dedicated [Rep-Seq](http://omictools.com/rep-seq-c424-p1.html) methods and software.
Vidjil-algo processes high-throughput sequencing data to extract V(D)J
junctions and gather them into clones. Vidjil-algo starts
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......@@ -10,7 +10,7 @@ repo_name: gitlab
pages:
- / : index.md
- user manual: user.md
- recombinations: locus.md
- libraries, recombinations: locus.md
- vidjil-algo: vidjil-algo.md
- .vidjil format: vidjil-format.md
- admin: admin.md
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