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vidjil
vidjil
Commits
ae5890aa
Commit
ae5890aa
authored
Mar 11, 2019
by
Mathieu Giraud
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doc/vidjil-algo.md: --grep-reads
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doc/vidjil-algo.md
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@@ -452,8 +452,10 @@ This filtering will work as expected when the provided sequence overlaps
With the
`--label-filter`
option,
*only*
the windows related to the given sequences are kept.
This allows to quickly filter a set of reads, looking for a known sequence or window,
with the
`--out-reads --label-filter --label <sequence>`
options:
All the reads with the windows related to the sequence will be extracted to
`out/seq/clone.fa-1`
.
with the
`--grep-reads <sequence>`
preset, equivalent to
`--out-reads --label-filter --label <sequence>`
:
All the reads with the windows related to the sequence will be extracted
to files such as
`out/seq/clone.fa-1`
.
## Clone analysis: VDJ assignation and CDR3 detection
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