Tests: Add a test to check that we are able to segment a long recombination.

This test is a real recombination and should be properly segmented

Tests: Add a test to check that we are able to segment a long recombination.
This test is a real recombination and should be properly segmented
acb07b3d · Mikaël Salson · Mathieu Giraud · 6cf8c802 · acb07b3d · acb07b3d
Commit acb07b3d authored Mar 31, 2014 by Mikaël Salson Committed by Mathieu Giraud Apr 01, 2014
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algo/tests/vidjil_long_segment.should_get algo/tests/vidjil_long_segment.should_get +4 -0

data/long-segmentation.fa data/long-segmentation.fa +2 -0

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--- a/algo/tests/vidjil_long_segment.should_get
+++ b/algo/tests/vidjil_long_segment.should_get
+!LAUNCH: ../../vidjil -G ../../germline/IGH -d ../../data/long-segmentation.fa 
+
+$ Sequence should be segmented by k-mer segmenter
+e1:SEG_+ -> 1 
--- a/data/long-segmentation.fa
+++ b/data/long-segmentation.fa
+>long-seq
+GCAGCCTGAGATCTGAGGACACAGCCATGTATTACTGTGCAAGATTTTTGAGGATGAGGATTGCGGAGTGGGAGTCGGGGCGTTGAGTGCCCCCGACCGACTTACTACCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGTAAGCCCTATAGTGAGTCGTATTAAGATCGGAAGAGCACACGTCTGAACTCCAG