vidjil: vanity, bump year to 2017, welcome Aurélien in team

README.org

 #+TITLE: Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire
-#+AUTHOR: The Vidjil team (Mathieu, Mikaël and Marc)
+#+AUTHOR: The Vidjil team (Mathieu, Mikaël, Aurélien, Florian, Marc, Ryan and Tatiana)
 
 [[https://travis-ci.org/vidjil/vidjil][https://img.shields.io/travis/vidjil/vidjil/master.svg]]
 [[http://opensource.org/licenses/GPL-3.0][http://img.shields.io/badge/license-GPLv3+-green.svg]]
@@ -7,7 +7,7 @@
 # https://coveralls.io/r/vidjil/vidjil http://img.shields.io/coveralls/vidjil/vidjil.svg
 
 # Vidjil -- V(D)J recombinations analysis -- [[http://www.vidjil.org]]
-# Copyright (C) 2011-2016 by Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
+# Copyright (C) 2011-2017 by Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
 # [[contact@vidjil.org]]
 
 V(D)J recombinations in lymphocytes are essential for immunological

algo/core/cluster-junctions.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015 by Bonsai bioinformatics 
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>

algo/core/compare-all.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015 by Bonsai bioinformatics 
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>

algo/core/dynprog.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015 by Bonsai bioinformatics 
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>

algo/core/fasta.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015 by Bonsai bioinformatics 
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>

algo/core/kmeraffect.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015, 2016 by Bonsai bioinformatics
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>

algo/core/kmerstore.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015 by Bonsai bioinformatics 
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>

algo/core/segment.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015, 2016 by Bonsai bioinformatics
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>

algo/core/similarityMatrix.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015 by Bonsai bioinformatics 
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>

algo/vidjil.cpp

 /*
   This file is part of Vidjil <http://www.vidjil.org>
-  Copyright (C) 2011, 2012, 2013, 2014, 2015, 2016 by Bonsai bioinformatics
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
   at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
   Contributors: 
       Mathieu Giraud <mathieu.giraud@vidjil.org>
@@ -283,7 +283,7 @@ double atof_NO_LIMIT(char *optarg)
 int main (int argc, char **argv)
 {
   cout << "# Vidjil -- V(D)J recombinations analysis <http://www.vidjil.org/>" << endl
-       << "# Copyright (C) 2011, 2012, 2013, 2014, 2015, 2016 by the Vidjil team" << endl
+       << "# Copyright (C) 2011-2017 by the Vidjil team" << endl
        << "# Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille" << endl 
        << endl
        << "# Vidjil is free software, and you are welcome to redistribute it" << endl

browser/index.html

 <!doctype html>
 
 <!-- 
-  This file is part of "Vidjil" <http://bioinfo.lille.inria.fr/vidjil>, V(D)J repertoire browsing and analysis
-  Copyright (C) 2013, 2014 by Marc Duez <marc.duez@lifl.fr> and the Vidjil Team
-  Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
+  This file is part of Vidjil <http://www.vidjil.org>, High-throughput Analysis of V(D)J Immune Repertoire
+  Copyright (C) 2011-2017 by Bonsai bioinformatics
+  at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
 
   "Vidjil" is free software: you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

browser/js/axis.js

 /*
  * This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics 
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors: 
  *     Marc Duez <marc.duez@vidjil.org>

browser/js/clone.js

 /*
  * This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics 
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors: 
  *     Marc Duez <marc.duez@vidjil.org>

browser/js/com.js

 /*
  * This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics 
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors: 
  *     Marc Duez <marc.duez@vidjil.org>

browser/js/compare.js

 /*
  * This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics 
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors: 
  *     Antonette Carin <antonin.carette@etudiant.univ-lille1.fr>

browser/js/dbscan.js

 /*
  * This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics 
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors: 
  *     Antonette Carin <antonin.carette@etudiant.univ-lille1.fr>

browser/js/germline_builder.js

 /*
  * This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics 
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors: 
  *     Marc Duez <marc.duez@vidjil.org>

browser/js/graph.js

 /*
  * This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics 
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors: 
  *     Marc Duez <marc.duez@vidjil.org>

browser/js/list.js

 /*
  * This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics 
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors: 
  *     Marc Duez <marc.duez@vidjil.org>

browser/js/main.js

  /* This file is part of Vidjil <http://www.vidjil.org>,
  * High-throughput Analysis of V(D)J Immune Repertoire.
- * Copyright (C) 2013, 2014, 2015 by Bonsai bioinformatics
+ * Copyright (C) 2013-2017 by Bonsai bioinformatics
  * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
  * Contributors:
  *     Marc Duez <marc.duez@vidjil.org>