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vidjil
vidjil
Commits
ab1a838f
Commit
ab1a838f
authored
Jan 05, 2017
by
Mathieu Giraud
Browse files
vidjil: vanity, bump year to 2017, welcome Aurélien in team
parent
81eb736e
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35
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README.org
View file @
ab1a838f
#+TITLE: Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire
#+AUTHOR: The Vidjil team (Mathieu, Mikaël
an
d
Marc)
#+AUTHOR: The Vidjil team (Mathieu, Mikaël
, Aurélien, Flori
an
,
Marc
, Ryan and Tatiana
)
[[https://travis-ci.org/vidjil/vidjil][https://img.shields.io/travis/vidjil/vidjil/master.svg]]
[[http://opensource.org/licenses/GPL-3.0][http://img.shields.io/badge/license-GPLv3+-green.svg]]
...
...
@@ -7,7 +7,7 @@
# https://coveralls.io/r/vidjil/vidjil http://img.shields.io/coveralls/vidjil/vidjil.svg
# Vidjil -- V(D)J recombinations analysis -- [[http://www.vidjil.org]]
# Copyright (C) 2011-201
6
by Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
# Copyright (C) 2011-201
7
by Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
# [[contact@vidjil.org]]
V(D)J recombinations in lymphocytes are essential for immunological
...
...
algo/core/cluster-junctions.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
, 2012, 2013, 2014, 2015
by Bonsai bioinformatics
Copyright (C) 2011
-2017
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
algo/core/compare-all.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
, 2012, 2013, 2014, 2015
by Bonsai bioinformatics
Copyright (C) 2011
-2017
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
algo/core/dynprog.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
, 2012, 2013, 2014, 2015
by Bonsai bioinformatics
Copyright (C) 2011
-2017
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
algo/core/fasta.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
, 2012, 2013, 2014, 2015
by Bonsai bioinformatics
Copyright (C) 2011
-2017
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
algo/core/kmeraffect.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
,
201
2, 2013, 2014, 2015, 2016
by Bonsai bioinformatics
Copyright (C) 2011
-
201
7
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
algo/core/kmerstore.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
, 2012, 2013, 2014, 2015
by Bonsai bioinformatics
Copyright (C) 2011
-2017
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
algo/core/segment.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
,
201
2, 2013, 2014, 2015, 2016
by Bonsai bioinformatics
Copyright (C) 2011
-
201
7
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
algo/core/similarityMatrix.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
, 2012, 2013, 2014, 2015
by Bonsai bioinformatics
Copyright (C) 2011
-2017
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
algo/vidjil.cpp
View file @
ab1a838f
/*
This file is part of Vidjil <http://www.vidjil.org>
Copyright (C) 2011
,
201
2, 2013, 2014, 2015, 2016
by Bonsai bioinformatics
Copyright (C) 2011
-
201
7
by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
Contributors:
Mathieu Giraud <mathieu.giraud@vidjil.org>
...
...
@@ -283,7 +283,7 @@ double atof_NO_LIMIT(char *optarg)
int
main
(
int
argc
,
char
**
argv
)
{
cout
<<
"# Vidjil -- V(D)J recombinations analysis <http://www.vidjil.org/>"
<<
endl
<<
"# Copyright (C) 2011
,
201
2, 2013, 2014, 2015, 2016
by the Vidjil team"
<<
endl
<<
"# Copyright (C) 2011
-
201
7
by the Vidjil team"
<<
endl
<<
"# Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille"
<<
endl
<<
endl
<<
"# Vidjil is free software, and you are welcome to redistribute it"
<<
endl
...
...
browser/index.html
View file @
ab1a838f
<!doctype html>
<!--
This file is part of
"
Vidjil
"
<http://
bioinfo.lille.inria.fr/vidjil>, V(D)J repertoire browsing and analysis
Copyright (C) 201
3,
201
4
by
Marc Duez <marc.duez@lifl.fr> and the Vidjil Team
Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
This file is part of Vidjil <http://
www.vidjil.org>, High-throughput Analysis of V(D)J Immune Repertoire
Copyright (C) 201
1-
201
7
by
Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
"Vidjil" is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
...
...
browser/js/axis.js
View file @
ab1a838f
/*
* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Marc Duez <marc.duez@vidjil.org>
...
...
browser/js/clone.js
View file @
ab1a838f
/*
* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Marc Duez <marc.duez@vidjil.org>
...
...
browser/js/com.js
View file @
ab1a838f
/*
* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Marc Duez <marc.duez@vidjil.org>
...
...
browser/js/compare.js
View file @
ab1a838f
/*
* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Antonette Carin <antonin.carette@etudiant.univ-lille1.fr>
...
...
browser/js/dbscan.js
View file @
ab1a838f
/*
* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Antonette Carin <antonin.carette@etudiant.univ-lille1.fr>
...
...
browser/js/germline_builder.js
View file @
ab1a838f
/*
* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Marc Duez <marc.duez@vidjil.org>
...
...
browser/js/graph.js
View file @
ab1a838f
/*
* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Marc Duez <marc.duez@vidjil.org>
...
...
browser/js/list.js
View file @
ab1a838f
/*
* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Marc Duez <marc.duez@vidjil.org>
...
...
browser/js/main.js
View file @
ab1a838f
/* This file is part of Vidjil <http://www.vidjil.org>,
* High-throughput Analysis of V(D)J Immune Repertoire.
* Copyright (C) 2013
,
201
4, 2015
by Bonsai bioinformatics
* Copyright (C) 2013
-
201
7
by Bonsai bioinformatics
* at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
* Contributors:
* Marc Duez <marc.duez@vidjil.org>
...
...
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