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vidjil
vidjil
Commits
aaea134e
Commit
aaea134e
authored
Feb 29, 2016
by
Mathieu Giraud
Browse files
tests: CDR3/JUNCTION, these more difficult sequences should pass
parent
909f38c0
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algo/tests/should-vdj-tests/0000-nck-TRB.should-vdj.fa
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aaea134e
>TRBV6-1*01 3/5/2 TRBJ2-7*01 [TRB]
# {CASKVSP!YEQYF} # TODO: insert at the end of V
>TRBV6-1*01 3/5/2 TRBJ2-7*01 [TRB] {CASKVSP!YEQYF}
GAGGGTACCACTGACAAAGGAGAAGTCCCCAATGGCTACAATGTCTCCAGATTAAACAAACGGGAGTTCTCGCTCAGGCTGGAGTCGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAAGGTGAGTCCCCCTACGAGCAGTACTTCGGGCCGG
# AGC commun aux deux segments
>TRBV7-2*02 0/0/3 TRBJ2-3*01 [TRB]
# {CASSFSTDTQYF} # TODO: insert at the end of V
>TRBV7-2*02 0/0/3 TRBJ2-3*01 [TRB] {CASSFSTDTQYF}
TTACCCTTTACTGGTACCGGCAGAGGCTGGGGCAGGGCCTGGAGTTTTTAATTTACTTCCAAGGCAACAGTGCACCAGACAAATCAGGGCTGCCCAGTGATCGCTTCTCTGCAGAGAGGACTGGGGAATCCGTCTCCACTCTGACGATCCAGCGCACACAGCAGGAGGACTCGGCCGTGTATCTCTGTGCCAGCAGCTTTAGCACAGATACGCAGTATTTTGGCCCAGGCACCCGGCTGACAGTGCTCGGTAAGCGGG
>TRBV11-2*01 1/4/0 TRBJ2-7*01 [TRB] {CASSLGPSYEQYF}
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