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vidjil
vidjil
Commits
aab138db
Commit
aab138db
authored
Mar 11, 2015
by
Mikaël Salson
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kmersignals: unused files for years, removed
parent
7245e90e
Changes
3
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3 changed files
with
0 additions
and
46 deletions
+0
-46
algo/core/kmersignals.cpp
algo/core/kmersignals.cpp
+0
-16
algo/core/kmersignals.h
algo/core/kmersignals.h
+0
-29
algo/core/output.h
algo/core/output.h
+0
-1
No files found.
algo/core/kmersignals.cpp
deleted
100644 → 0
View file @
7245e90e
#include "kmersignals.h"
KmerSignals
::
KmerSignals
(
int
k
,
const
Fasta
&
input
,
IKmerStore
<
Kmer
>&
store
){
for
(
int
r
=
0
;
r
<
input
.
size
()
;
r
++
){
vector
<
Kmer
>
l
=
store
.
getResults
(
input
.
sequence
(
r
));
vector
<
int
>
s
(
l
.
size
());
for
(
size_t
i
=
0
;
i
<
l
.
size
()
;
i
++
)
s
[
i
]
=
l
[
i
].
count
;
}
}
int
KmerSignals
::
size
()
const
{
return
(
int
)
sig
.
size
();
}
int
KmerSignals
::
size
(
int
r
)
const
{
return
(
int
)
sig
[
r
].
size
();
}
int
KmerSignals
::
operator
()(
int
r
,
int
i
){
return
sig
[
r
][
i
];
}
algo/core/kmersignals.h
deleted
100644 → 0
View file @
7245e90e
#ifndef KMERSIGNALS_H
#define KMERSIGNALS_H
#include <vector>
#include "fasta.h"
#include "kmerstore.h"
using
namespace
std
;
class
IKmerSignals
{
public:
virtual
int
size
()
const
;
virtual
int
size
(
int
r
)
const
;
virtual
int
operator
()(
int
r
,
int
i
)
=
0
;
};
class
KmerSignals
{
vector
<
vector
<
int
>
>
sig
;
public:
KmerSignals
(
const
int
k
,
const
Fasta
&
input
,
IKmerStore
<
Kmer
>&
store
);
int
size
()
const
;
int
size
(
int
r
)
const
;
int
operator
()(
int
r
,
int
i
);
};
#endif
algo/core/output.h
View file @
aab138db
...
...
@@ -3,7 +3,6 @@
#include "fasta.h"
#include "kmerstore.h"
#include "kmersignals.h"
template
<
class
T
>
class
IOutput
...
...
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