kmersignals: unused files for years, removed

algo/core/kmersignals.cpp

-#include "kmersignals.h"
-
-KmerSignals::KmerSignals(int k, const Fasta& input, IKmerStore<Kmer>& store){
-	for(int r = 0 ; r < input.size() ; r++){
-                vector<Kmer> l = store.getResults(input.sequence(r));
-		vector<int> s(l.size());
-		for(size_t i = 0 ; i < l.size() ; i++)
-                  s[i] = l[i].count;
-	}
-}
-
-int KmerSignals::size() const{ return (int)sig.size(); }
-int KmerSignals::size(int r) const{ return (int)sig[r].size(); }
-int KmerSignals::operator()(int r, int i){
-	return sig[r][i];
-}

algo/core/kmersignals.h

-#ifndef KMERSIGNALS_H
-#define KMERSIGNALS_H
-
-#include <vector>
-#include "fasta.h"
-#include "kmerstore.h"
-
-using namespace std;
-
-class IKmerSignals
-{
-public:
-	virtual int size() const;
-	virtual int size(int r) const;
-	virtual int operator()(int r, int i)=0;
-};
-
-class KmerSignals
-{
-	vector<vector<int> > sig;
-public:
-	KmerSignals(const int k, const Fasta& input, IKmerStore<Kmer>& store);
-
-	int size() const;
-	int size(int r) const;
-	int operator()(int r, int i);
-};
-
-#endif

algo/core/output.h

@@ -3,7 +3,6 @@
 
 #include "fasta.h"
 #include "kmerstore.h"
-#include "kmersignals.h"
 
 template<class T>
 class IOutput