Commit a9b0fd39 authored by Mikaël Salson's avatar Mikaël Salson
Browse files

algo.org: How we can change the germlines

parent 0cfc2799
......@@ -232,6 +232,9 @@ Locus/recombinations
To select a custom set of TR or Ig locus, you may copy =germline/germlines.data= into a new file,
as for example =germline/custom-germlines.data=, and run Vidjil with =-g germline/custom-germlines.data -i -2=.
- Several =-g= options can be used, as for instance =-g germline -g germline/isotypes.data=.
- One can use other germline sequences possibly bydefining another
=germlines.data= file that would refer to an alternative germline set or by
overwriting the existing germline sequences (in the FASTA file).
** Main algorithm parameters
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