index.html: reword system into locus or germlines

browser/index.html

@@ -198,7 +198,7 @@
                     <a class="buttonSelector" onclick="m.changeColorMethod('J');">by J</a>
                     <a class="buttonSelector" onclick="m.changeColorMethod('N');">by N length</a>
                     <a class="buttonSelector" onclick="m.changeColorMethod('system');" 
-                        id="color_system_button" style="display:none">by system</a>
+                        id="color_system_button" style="display:none">by locus/germline</a>
                     <a class="buttonSelector" onclick="m.changeColorMethod('abundance');">by abundance at selected timepoint</a>
                     <!--<a class="buttonSelector" onclick="m.changeColorMethod('dbscan');">by the DBSCAN algorithm</a>-->
                 </div></div>
@@ -248,7 +248,7 @@
 
                     <div class="submenu" id="system_menu" style="display:none">
                         <div class="menu_box">
-                            germline (for color and scatterplot)</br>
+                            locus/germline (for color and scatterplot)</br>
                             <ul id="germline_list">
                             </ul>
                         </div>

browser/js/builder.js

@@ -603,7 +603,7 @@ Builder.prototype = {
             var div_multi_system = this.build_multi_system()
             parent.appendChild(div_multi_system)
         }else{
-            var div_system = this.build_info_line("info_system", "system", this.m.system)
+            var div_system = this.build_info_line("info_system", "germline", this.m.system)
             parent.appendChild(div_system)
         }
         
@@ -699,7 +699,7 @@ Builder.prototype = {
 
         // Segmented reads, on the selected system(s)
         if (this.m.system == "multi") {
-            var val = "no reads on selected systems" ;
+            var val = "no reads on selected germlines" ;
 
             if (this.m.reads.segmented[this.m.t] > 0)
             {
@@ -711,7 +711,7 @@ Builder.prototype = {
                 else if (percent < 50)  { warning = "warning" ;  }
             }
 
-            var div_segmented = this.build_info_line("info_segmented", "on systems", val, warning)
+            var div_segmented = this.build_info_line("info_segmented", "on germlines", val, warning)
             parent.appendChild(div_segmented)
         }