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vidjil
vidjil
Commits
a7aaee81
Commit
a7aaee81
authored
Sep 30, 2016
by
Mathieu Giraud
2
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vidjil: release 2016.09
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a7aaee81
This changelog concerns the algorithmic part (C++) of Vidjil.
2016-09-
xx
The Vidjil Team
2016-09-
30
The Vidjil Team
* New default trim option (-t 0) for germlines, leading to better results on some special recombinations (vidjil.cpp)
* More flexible option to keep sequences of intereset (-W), accepting sequences of any size (core/windows.cpp)
* Better generation of consensus sequences, marking ambiguous positions with Ns (core/representative.cpp)
* Better recognition of standard recombinations by lowering incomplete germline attractiveness (core/segment.cpp)
* Better TRD locus analysis, including Dd-Dd-Jd recombinations (data/germlines.data)
* Better TRD locus analysis, including
some
Dd-Dd-Jd recombinations (data/germlines.data)
* Reduced unused similarity section of .json file output (vidjil.cpp)
* New json output with -c segment (vidjil.cpp)
* Updated help (doc/algo.org)
...
...
Mathieu Giraud
@magiraud
mentioned in commit
d9c8b51c
·
Mar 13, 2017
mentioned in commit
d9c8b51c
mentioned in commit d9c8b51c2c87ef309bfc72eec60f39a5272460ff
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Thonier Florian
@flothoni
mentioned in issue
#2107 (closed)
·
Mar 17, 2017
mentioned in issue
#2107 (closed)
mentioned in issue #2107
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