Commit a6f25f14 authored by Mikaël Salson's avatar Mikaël Salson
Browse files

0000-nck-TRB.should-vdj.fa: Sevral alternatives

Corrects previous commit thanks to @magiraud.

The two alternatives could be correct depending on the score scheme.
However Vidjil gives none of them (see #2904), hence the BUG keyword.
parent dc488e17
Pipeline #11547 passed with stages
in 20 minutes and 17 seconds
......@@ -7,10 +7,15 @@ GAGGGTACCACTGACAAAGGAGAAGTCCCCAATGGCTACAATGTCTCCAGATTAAACAAACGGGAGTTCTCGCTCAGGCT
# AGC commun aux deux segments
# read: GTGTATCTCTGTGCCAGCAGCTTTAGCACAGATACGCAGTATTTTGGCCC
# ||||||||||||||||||||||| ||||||||||||||||||||
# ||||||||||||||||||||||| |||
# TRBV7-2*02 GTGTATCTCTGTGCCAGCAGCTT-AGC
# |||||||||||||||||
# TRBJ2-3*01 AGCACAGATACGCAGTATTT
# ou |||||||||||||||||||||||
# TRBV7-2*02 GTGTATCTCTGTGCCAGCAGCTTAGC
# ||||||||||||||||||||
# TRBJ2-3*01 AGCACAGATACGCAGTATTT
>TRBV7-2*02 3/T/0 TRBJ2-3*01 [TRB] {CASSFSTDTQYF} BUG
>TRBV7-2*02 (3/T/0, 0//3) TRBJ2-3*01 [TRB] {CASSFSTDTQYF} BUG
TTACCCTTTACTGGTACCGGCAGAGGCTGGGGCAGGGCCTGGAGTTTTTAATTTACTTCCAAGGCAACAGTGCACCAGACAAATCAGGGCTGCCCAGTGATCGCTTCTCTGCAGAGAGGACTGGGGAATCCGTCTCCACTCTGACGATCCAGCGCACACAGCAGGAGGACTCGGCCGTGTATCTCTGTGCCAGCAGCTTTAGCACAGATACGCAGTATTTTGGCCCAGGCACCCGGCTGACAGTGCTCGGTAAGCGGG
>TRBV11-2*01 1/4/0 TRBJ2-7*01 [TRB] {CASSLGPSYEQYF}
......
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