Nous avons procédé ce jeudi matin 08 avril 2021 à une MAJ de sécurité urgente. Nous sommes passé de la version 13.9.3 à la version 13.9.5 les releases notes correspondantes sont ici:
https://about.gitlab.com/releases/2021/03/17/security-release-gitlab-13-9-4-released/
https://about.gitlab.com/releases/2021/03/31/security-release-gitlab-13-10-1-released/

Commit a5f47128 authored by marc duez's avatar marc duez Committed by Mathieu Giraud

aligner_sequence : store unaligned AA sequence

parent 13251649
......@@ -296,8 +296,8 @@ Sequence.prototype = {
i=i+3;
}
}
this.seqAA = this.align(this.seqAA.join(''), SYMBOL_VOID).split("");
return this.seqAA.join('');
return this.align(this.seqAA.join(''), SYMBOL_VOID);
},
aminoSplitString: function () {
......@@ -457,8 +457,9 @@ Sequence.prototype = {
substitutionString: function(){
var seq,ref;
if (LAYERS.amino.enabled) {
seq = this.seqAA;
ref = this.segmenter.sequence[this.segmenter.sequence_order[0]].seqAA;
seq = this.align(this.seqAA.join(''), SYMBOL_VOID)
var r = this.segmenter.sequence[this.segmenter.sequence_order[0]];
ref = r.aminoString();
} else {
seq = this.seq;
ref = this.segmenter.sequence[this.segmenter.sequence_order[0]].seq;
......@@ -478,8 +479,9 @@ Sequence.prototype = {
deletionString: function(){
var seq,ref;
if (LAYERS.amino.enabled) {
seq = this.seqAA;
ref = this.segmenter.sequence[this.segmenter.sequence_order[0]].seqAA;
seq = this.align(this.seqAA.join(''), SYMBOL_VOID)
var r = this.segmenter.sequence[this.segmenter.sequence_order[0]];
ref = r.align(r.seqAA.join(''), SYMBOL_VOID)
} else {
seq = this.seq;
ref = this.segmenter.sequence[this.segmenter.sequence_order[0]].seq;
......@@ -499,8 +501,9 @@ Sequence.prototype = {
insertionString: function(){
var seq,ref;
if (LAYERS.amino.enabled) {
seq = this.seqAA;
ref = this.segmenter.sequence[this.segmenter.sequence_order[0]].seqAA;
seq = this.align(this.seqAA.join(''), SYMBOL_VOID)
var r = this.segmenter.sequence[this.segmenter.sequence_order[0]];
ref = r.align(r.seqAA.join(''), SYMBOL_VOID)
} else {
seq = this.seq;
ref = this.segmenter.sequence[this.segmenter.sequence_order[0]].seq;
......
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