Commit a4f2097f authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

tests: check warning/custom messages from split-germlines.py

see #4657
parent cb527c4c
Pipeline #205642 passed with stages
in 15 minutes and 38 seconds
$ Checking consistency of the germlines and special cases
!OUTPUT_FILE: ../../split-germlines.log
!NO_LAUNCHER:
!LAUNCH: echo
$ No position
33: No position
$ No Phe/Trp-Gly-X-Gly pattern
32: No Phe.Trp.Gly.X.Gly pattern
$ 118 positions
12: Custom 118 position
$ Up/down-streams
3:# Custom up/downstream
2:# Custom up/downstream .* IGHJ1P
1:# Custom up/downstream .* IGHD7-27
!OUTPUT_FILE: ../../split-germlines.err
!NO_LAUNCHER:
!LAUNCH: echo
$ Consistency IMGT/NCBI
13: Sequences for .* differ between IMGT and NCBI
11: Length for .* differ between IMGT .* and NCBI
\ No newline at end of file
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment